Feature Comparison Chart
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| Feature | Basic | Pro |
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| Sequence viewing – Circular sequence viewer. Consensus, translation and complement along-side sequences. |
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| Contig assembly – Automated contig assembly, sequence trimming, vector screening and easy contig editing |
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| Primers – designing and testing, degenerate primers, mismatches and multiple primer searching. (Includes software developed by the Whitehead Institute for Biomedical Research) |
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| Cloning – Find and view restriction cut sites, perform restriction enzyme digests and ligate fragments. |
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| Sequence editing – Edit sequences, sequence alignments and annotations |
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| Collaborate – Share documents and chat with other users of Geneious Pro from anywhere in the world |
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| Server Data Storage – Store data on a secure relational database (SQL, Oracle etc.) where multiple users can work with the data concurrently. |
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| Agents and smart agents – Agents keep your data up to date while smart agents learn about the documents you are interested in and find more for you! |
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| Sequence graphs – Sequence logo graph, view and edit chromatogram sequences. |
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| Extended connectivity – Create custom BLAST databases. Seamless integration with Pfam, NCBI Gene and NCBI SNP databases. |
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| Advanced alignment – MUSCLE, ClustalW, translation aignment, profile alignment and consensus alignment |
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| Pro only Plugins – PAUP*, EMBOSS, Mauve genome alignment and more |
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| Motifs and ORFs – Quickly identify and annotate motifs and open reading frames |
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| Geneious education – Create and use interactive tutorials for learning within Geneious |
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| Interoperability – Import formats from other tools like DNAStar, PIR, EMBL, GCG and Phylip, list of formats |
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| Chromosome viewing – Load, view, edit full human chromosomes or up to 10,000 HIV genomes |
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| Publication images – Publication quality image export to vector graphic formats |
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| Organize and visualize – Organize, visualize and search sequences (with annotations), alignments, phylogenetic trees, publications, protein structures and more! |
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| Database integration – Seamlessly integrated searching with Genbank, PubMed, BLAST and UniProt |
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| Align and build trees – Basic pairwise alignment, multiple alignment and tree building methods including bootstrapping and consensus trees. |
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| Import and Export – Import and export Newick, Nexus, FASTA and Endnote formats. Import PDF, 3D Structures, Vector NTI, Chromatograms, DNA Strider, Clustal, list of formats |
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| Plugins – Free plugins for extended functionality, Public Java API (application programming interface) for developing your own plugins |
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